STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FYTTD1Forty-two-three domain containing 1. (336 aa)    
Predicted Functional Partners:
ddx39a
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa.
   
 0.857
sarnp
SAP domain containing ribonucleoprotein.
    
 0.847
W5N236_LEPOC
Polymerase (DNA-directed), delta interacting protein 3.
    
 0.820
thoc5
THO complex 5.
    
 0.795
thoc7
THO complex 7.
   
 0.782
thoc1
THO complex 1.
   
 0.774
thoc2
THO complex 2.
    
 0.765
W5N908_LEPOC
Aly/REF export factor.
    
 0.734
LOC107079539
FH2 domain-containing protein.
    
 0.712
W5MPP8_LEPOC
FH2 domain containing 1.
    
 0.712
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.