STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MPN4_LEPOCRubicon autophagy regulator. (928 aa)    
Predicted Functional Partners:
W5MBD8_LEPOC
UV radiation resistance associated gene.
    
 0.995
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 
 0.962
becn1
Beclin 1, autophagy related.
    
 
 0.960
WDFY4
WDFY family member 4.
   
 0.870
pik3r4
Phosphoinositide-3-kinase, regulatory subunit 4.
    
 
 0.817
rab7a
RAB7A, member RAS oncogene family.
    
 
 0.807
LOC102697663
Zgc:100918.
    
 
 0.807
atg14
Autophagy related 14.
    
 
 0.659
RANBP2
RAN binding protein 2.
    
   0.536
arl8b
ADP-ribosylation factor-like 8Bb; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.512
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.