STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
micu1Mitochondrial calcium uptake 1. (489 aa)    
Predicted Functional Partners:
smdt1
Single-pass membrane protein with aspartate-rich tail 1b.
    
 0.999
W5M0W0_LEPOC
Mitochondrial calcium uptake 2.
    
0.996
mcu
Mitochondrial calcium uniporter.
    
 0.987
MCUB
Mitochondrial calcium uniporter dominant negative beta subunit.
    
 0.987
micu3
Mitochondrial calcium uptake family, member 3b.
   
0.957
phb2
Prohibitin.
    
 0.880
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
    
 0.749
phb
Prohibitin.
    
 0.735
W5LYT8_LEPOC
Si:ch1073-174d20.2.
    
 0.730
afg3l2
AFG3-like AAA ATPase 2.
    
 0.730
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.