STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZC3H3Zinc finger CCCH-type containing 3. (998 aa)    
Predicted Functional Partners:
W5MPM7_LEPOC
Cleavage and polyadenylation specific factor 1.
   
 0.957
RBBP6
RB binding protein 6, ubiquitin ligase.
    
 0.953
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.953
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
    
 0.949
W5NAW7_LEPOC
WD_REPEATS_REGION domain-containing protein.
   
 0.949
cpsf3
Cleavage and polyadenylation specific factor 3.
   
 0.949
cstf1
Cleavage stimulation factor, 3' pre-RNA, subunit 1.
   
 0.946
nudt21
Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]
    
 0.943
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
   
 0.940
W5MN48_LEPOC
Cleavage and polyadenylation factor I subunit 1.
    
 0.910
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.