STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MQ35_LEPOCNucleolar and coiled-body phosphoprotein 1. (980 aa)    
Predicted Functional Partners:
W5MBV0_LEPOC
Nop domain-containing protein.
   
 
 0.992
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.989
W5MB94_LEPOC
Fibrillarin.
   
 
 0.986
W5N8G8_LEPOC
Dyskeratosis congenita 1, dyskerin.
   
 
 0.984
rsl1d1
Ribosomal L1 domain containing 1.
   
 
 0.947
trub1
TruB pseudouridine (psi) synthase family member 1.
   
 
 0.922
cebpz
CCAAT enhancer binding protein zeta.
   
   0.922
polr1b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.916
polr1a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.887
W5MKP2_LEPOC
Peter pan homolog; Belongs to the G-protein coupled receptor 1 family.
   
   0.886
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.