STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MQC6_LEPOCCadherin-related 23. (3313 aa)    
Predicted Functional Partners:
W5M227_LEPOC
Usher syndrome 1C.
   
 
 0.958
W5MH39_LEPOC
Protocadherin-related 15b.
   
0.935
W5M2X2_LEPOC
Uncharacterized protein.
   
 0.915
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.733
LOC102695806
Junction plakoglobin b.
    
 0.733
TMC1
Transmembrane channel-like protein.
    
 
 0.703
lhfpl5
LHFPL tetraspan subfamily member 5a.
   
 0.684
ush1g
Usher syndrome 1Gb (autosomal recessive).
   
 
 0.671
fjx1
Four-jointed box kinase 1.
   
 0.644
LOC102688759
Transmembrane channel-like protein.
    
 
 0.616
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.