STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccnkCyclin K; Belongs to the cyclin family. (562 aa)    
Predicted Functional Partners:
cdk13
Cyclin-dependent kinase 13.
    
 0.992
W5N4Z4_LEPOC
Cyclin-dependent kinase 12.
    
 0.992
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase).
   
 0.972
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.970
supt4h1
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
    
 0.946
ccnh
Cyclin H; Belongs to the cyclin family.
     
 0.937
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
    
 0.931
cnot2
CCR4-NOT transcription complex, subunit 2.
   
   0.925
LOC102683016
Negative elongation factor complex member E.
    
 0.923
ccnt2
Cyclin T2a; Belongs to the cyclin family.
   
 
0.906
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.