STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sptlc2Serine palmitoyltransferase, long chain base subunit 2a. (568 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
  
0.986
sptssa
Serine palmitoyltransferase, small subunit A.
    
 0.921
W5NLI1_LEPOC
Serine palmitoyltransferase, small subunit B.
    
 0.865
kdsr
3-ketodihydrosphingosine reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.861
sord
Sorbitol dehydrogenase.
 
 
 0.859
LOC102687825
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 0.858
ormdl1
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 0.858
LOC102682395
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 0.858
cbs
Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.832
agxt
Serine--pyruvate aminotransferase.
    
 0.828
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (30%) [HD]