STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MRB6_LEPOCUncharacterized protein. (233 aa)    
Predicted Functional Partners:
W5MGE8_LEPOC
Sortilin-related receptor, L(DLR class) A repeats containing.
    
 0.819
NTF4
Neurotrophin 4; Belongs to the NGF-beta family.
    
 0.717
ntf3
Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family.
    
 0.717
ptk7
Protein tyrosine kinase 7a; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.663
LOC102692225
Neurotrophin receptor associated death domain.
    
  0.547
W5NLC0_LEPOC
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
     
 0.515
ngf
Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.
     
 0.515
PDGFB
Platelet derived growth factor subunit B; Belongs to the PDGF/VEGF growth factor family.
   
 
  0.495
W5MG55_LEPOC
Glyoxalase domain containing 4.
    
  0.489
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
   
 
  0.470
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.