STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MRH7_LEPOCCollagen, type IV, alpha 2. (1651 aa)    
Predicted Functional Partners:
LOC102686256
C1q and TNF related 9.
  
 
0.658
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.626
itgb3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.626
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.619
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.614
itgb4
Integrin beta.
   
 0.611
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
  0.610
itgb7
Integrin beta; Belongs to the integrin beta chain family.
    
 0.605
otol1
Otolin 1b.
  
  
 
0.602
itga3
Integrin, alpha 3a; Belongs to the integrin alpha chain family.
    
 0.599
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.