STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lhx4LIM homeobox 4. (388 aa)    
Predicted Functional Partners:
W5MIQ0_LEPOC
ISL LIM homeobox 1.
   
0.892
isl2
ISL LIM homeobox 2a.
   
0.892
ALX3
ALX homeobox 3.
   
0.818
ldb2
LIM domain binding 2a.
    
 0.752
ldb1
LIM domain binding 1a.
    
 0.752
LOC102695312
Uncharacterized protein.
 
  
  0.747
ssbp2
Single-stranded DNA binding protein 2.
    
 
 0.583
ssbp3
LisH domain-containing protein.
    
 
 0.583
W5MEG5_LEPOC
Zgc:110158.
    
 
 0.583
LOC102689425
Homeobox domain-containing protein.
    
0.520
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.