STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102688298Notochord homeobox. (279 aa)    
Predicted Functional Partners:
LOC102690128
T-box transcription factor Ta.
    
 0.744
bsx
Brain-specific homeobox.
   
 
0.633
W5MX61_LEPOC
T-box transcription factor 19.
    
 0.578
W5NIF4_LEPOC
T-box transcription factor Tb.
    
 0.578
foxa2
Forkhead box A2.
    
 0.575
LOC102690906
T-box transcription factor 16.
   
 
 0.535
foxa1
Forkhead box A1.
    
 0.527
W5N731_LEPOC
T-box transcription factor 21.
    
 0.519
foxa3
Forkhead box A3.
    
 0.411
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.