sfxn5 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sfxn5

Sidoreflexin. (324 aa)

Predicted Functional Partners:

W5MTZ6_LEPOC

0.777

rab11b

0.723

rab25

0.723

rab11a

0.723

W5NCQ2_LEPOC

0.723

W5MR01_LEPOC

0.660

LOC102693466

0.527

ehd4

0.527

W5NA35_LEPOC

0.527

LOC102697528

0.527

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102693466	W5MTZ6_LEPOC	ENSLOCP00000001030	ENSLOCP00000011855	EH-domain containing 1b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	RAB11 family interacting protein 2 (class I).	0.892
LOC102693466	W5NCQ2_LEPOC	ENSLOCP00000001030	ENSLOCP00000018411	EH-domain containing 1b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Uncharacterized protein.	0.885
LOC102693466	sfxn5	ENSLOCP00000001030	ENSLOCP00000011384	EH-domain containing 1b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Sidoreflexin.	0.527
LOC102697528	W5MTZ6_LEPOC	ENSLOCP00000020749	ENSLOCP00000011855	EH-domain containing 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	RAB11 family interacting protein 2 (class I).	0.669
LOC102697528	W5NCQ2_LEPOC	ENSLOCP00000020749	ENSLOCP00000018411	EH-domain containing 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Uncharacterized protein.	0.611
LOC102697528	sfxn5	ENSLOCP00000020749	ENSLOCP00000011384	EH-domain containing 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Sidoreflexin.	0.527
W5MR01_LEPOC	W5MTZ6_LEPOC	ENSLOCP00000010810	ENSLOCP00000011855	RAB25, member RAS oncogene family a.	RAB11 family interacting protein 2 (class I).	0.866
W5MR01_LEPOC	W5NCQ2_LEPOC	ENSLOCP00000010810	ENSLOCP00000018411	RAB25, member RAS oncogene family a.	Uncharacterized protein.	0.868
W5MR01_LEPOC	sfxn5	ENSLOCP00000010810	ENSLOCP00000011384	RAB25, member RAS oncogene family a.	Sidoreflexin.	0.660
W5MTZ6_LEPOC	LOC102693466	ENSLOCP00000011855	ENSLOCP00000001030	RAB11 family interacting protein 2 (class I).	EH-domain containing 1b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.892
W5MTZ6_LEPOC	LOC102697528	ENSLOCP00000011855	ENSLOCP00000020749	RAB11 family interacting protein 2 (class I).	EH-domain containing 3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.669
W5MTZ6_LEPOC	W5MR01_LEPOC	ENSLOCP00000011855	ENSLOCP00000010810	RAB11 family interacting protein 2 (class I).	RAB25, member RAS oncogene family a.	0.866
W5MTZ6_LEPOC	W5NA35_LEPOC	ENSLOCP00000011855	ENSLOCP00000017494	RAB11 family interacting protein 2 (class I).	EH-domain containing 2a; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.611
W5MTZ6_LEPOC	W5NCQ2_LEPOC	ENSLOCP00000011855	ENSLOCP00000018411	RAB11 family interacting protein 2 (class I).	Uncharacterized protein.	0.711
W5MTZ6_LEPOC	ehd4	ENSLOCP00000011855	ENSLOCP00000011942	RAB11 family interacting protein 2 (class I).	EH-domain containing 4; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.611
W5MTZ6_LEPOC	rab11a	ENSLOCP00000011855	ENSLOCP00000017060	RAB11 family interacting protein 2 (class I).	RAB11a, member RAS oncogene family.	0.971
W5MTZ6_LEPOC	rab11b	ENSLOCP00000011855	ENSLOCP00000005366	RAB11 family interacting protein 2 (class I).	RAB11B, member RAS oncogene family, a.	0.971
W5MTZ6_LEPOC	rab25	ENSLOCP00000011855	ENSLOCP00000010800	RAB11 family interacting protein 2 (class I).	RAB11a, member RAS oncogene family, like.	0.971
W5MTZ6_LEPOC	sfxn5	ENSLOCP00000011855	ENSLOCP00000011384	RAB11 family interacting protein 2 (class I).	Sidoreflexin.	0.777
W5NA35_LEPOC	W5MTZ6_LEPOC	ENSLOCP00000017494	ENSLOCP00000011855	EH-domain containing 2a; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	RAB11 family interacting protein 2 (class I).	0.611