STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc127Coiled-coil domain containing 127a. (267 aa)    
Predicted Functional Partners:
W5NKQ2_LEPOC
SPT7 like, STAGA complex gamma subunit.
   
  
 0.615
W5LWI7_LEPOC
GIDA_assoc domain-containing protein.
      
 0.544
W5MVP8_LEPOC
Transcriptional adapter.
      
 0.534
asb7
Ankyrin repeat and SOCS box containing 7.
      
 0.523
cnot10
CCR4-NOT transcription complex, subunit 10.
      
 0.507
CFAP61
Cilia and flagella associated protein 61.
      
 0.420
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.