STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102694226Transmembrane and ubiquitin-like domain containing 1. (275 aa)    
Predicted Functional Partners:
rnf170
Ring finger protein 170.
    
 
 0.642
tmub2
Transmembrane and ubiquitin-like domain containing 2.
  
 
 
0.628
W5MA74_LEPOC
ER lipid raft associated 1.
    
 
 0.600
LOC102688014
Cholesterol 25-hydroxylase like 3.
    
 
 0.600
rnf185
Ring finger protein 185.
    
 
 0.598
clg16h6orf120
Zgc:77929.
      
 0.550
fam8a1
Family with sequence similarity 8 member A1b.
      
 0.536
tmem259
Transmembrane protein 259.
    
 
 0.531
STK4
Serine/threonine kinase 4.
    
  0.511
W5MUB8_LEPOC
Serine/threonine kinase 3 (STE20 homolog, yeast).
    
  0.511
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.