STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rgp1GP1 homolog, RAB6A GEF complex partner 1. (390 aa)    
Predicted Functional Partners:
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.999
rab6a
RAB6A, member RAS oncogene family.
    
 0.826
rab41
RAB41, member RAS oncogene family.
    
 0.826
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.782
vps53
VPS53 subunit of GARP complex.
     
 0.768
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.761
rab36
RAB36, member RAS oncogene family.
    
 0.754
rab34
RAB34, member RAS oncogene family a.
    
 0.754
stx16
Syntaxin 16.
    
 0.750
W5NDJ0_LEPOC
ADP-ribosylation factor-like 1.
    
  0.745
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.