STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apbb1Amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65). (710 aa)    
Predicted Functional Partners:
W5MXT3_LEPOC
Amyloid beta (A4) precursor protein b.
    
 0.907
aplp2
Amyloid beta (A4) precursor-like protein 2.
    
 0.818
W5M8N9_LEPOC
Amyloid beta (A4) precursor-like protein 1.
    
 0.794
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
  0.669
mapk8
Mitogen-activated protein kinase.
    
 0.631
mapk10
Mitogen-activated protein kinase.
    
 0.631
rad50
RAD50 homolog, double strand break repair protein.
   
 0.622
W5MW35_LEPOC
Nibrin.
    
  0.621
gak
Cyclin G associated kinase.
   
 0.604
LOC102699233
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.600
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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