STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d19TBC1 domain family, member 19. (527 aa)    
Predicted Functional Partners:
ttll1
Tubulin tyrosine ligase-like family, member 1.
   
 
 0.795
nicn1
Nicolin 1.
    
   0.774
LRRC49
Leucine rich repeat containing 49.
   
   0.682
W5NII6_LEPOC
Tubulin tyrosine ligase.
   
 
 0.596
W5NII7_LEPOC
Uncharacterized protein.
   
 
 0.596
TBC1D13
TBC1 domain family member 13.
      
 0.539
tbc1d7
TBC1 domain family, member 7.
      
 0.497
CCKAR
Cholecystokinin A receptor; Belongs to the G-protein coupled receptor 1 family.
      
 0.434
wdfy3
WD repeat and FYVE domain containing 3.
      
 0.422
tbc1d10a
TBC1 domain family, member 10Ab.
      
 0.422
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.