sfxn4 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

sfxn4

Sideroflexin 4. (317 aa)

Predicted Functional Partners:

rab11b

0.526

rab25

0.526

W5MR01_LEPOC

0.526

rab11a

0.526

rabl2b

0.526

TSFM

0.456

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TSFM	sfxn4	ENSLOCP00000007985	ENSLOCP00000011921	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Sideroflexin 4.	0.456
W5MR01_LEPOC	sfxn4	ENSLOCP00000010810	ENSLOCP00000011921	RAB25, member RAS oncogene family a.	Sideroflexin 4.	0.526
rab11a	rab11b	ENSLOCP00000017060	ENSLOCP00000005366	RAB11a, member RAS oncogene family.	RAB11B, member RAS oncogene family, a.	0.855
rab11a	rab25	ENSLOCP00000017060	ENSLOCP00000010800	RAB11a, member RAS oncogene family.	RAB11a, member RAS oncogene family, like.	0.844
rab11a	sfxn4	ENSLOCP00000017060	ENSLOCP00000011921	RAB11a, member RAS oncogene family.	Sideroflexin 4.	0.526
rab11b	rab11a	ENSLOCP00000005366	ENSLOCP00000017060	RAB11B, member RAS oncogene family, a.	RAB11a, member RAS oncogene family.	0.855
rab11b	rab25	ENSLOCP00000005366	ENSLOCP00000010800	RAB11B, member RAS oncogene family, a.	RAB11a, member RAS oncogene family, like.	0.851
rab11b	sfxn4	ENSLOCP00000005366	ENSLOCP00000011921	RAB11B, member RAS oncogene family, a.	Sideroflexin 4.	0.526
rab25	rab11a	ENSLOCP00000010800	ENSLOCP00000017060	RAB11a, member RAS oncogene family, like.	RAB11a, member RAS oncogene family.	0.844
rab25	rab11b	ENSLOCP00000010800	ENSLOCP00000005366	RAB11a, member RAS oncogene family, like.	RAB11B, member RAS oncogene family, a.	0.851
rab25	sfxn4	ENSLOCP00000010800	ENSLOCP00000011921	RAB11a, member RAS oncogene family, like.	Sideroflexin 4.	0.526
rabl2b	sfxn4	ENSLOCP00000020726	ENSLOCP00000011921	RAB, member of RAS oncogene family-like 2.	Sideroflexin 4.	0.526
sfxn4	TSFM	ENSLOCP00000011921	ENSLOCP00000007985	Sideroflexin 4.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.456
sfxn4	W5MR01_LEPOC	ENSLOCP00000011921	ENSLOCP00000010810	Sideroflexin 4.	RAB25, member RAS oncogene family a.	0.526
sfxn4	rab11a	ENSLOCP00000011921	ENSLOCP00000017060	Sideroflexin 4.	RAB11a, member RAS oncogene family.	0.526
sfxn4	rab11b	ENSLOCP00000011921	ENSLOCP00000005366	Sideroflexin 4.	RAB11B, member RAS oncogene family, a.	0.526
sfxn4	rab25	ENSLOCP00000011921	ENSLOCP00000010800	Sideroflexin 4.	RAB11a, member RAS oncogene family, like.	0.526
sfxn4	rabl2b	ENSLOCP00000011921	ENSLOCP00000020726	Sideroflexin 4.	RAB, member of RAS oncogene family-like 2.	0.526