STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MUC8_LEPOCTransient receptor potential cation channel, subfamily M, member 2. (1438 aa)    
Predicted Functional Partners:
nudt5
Nudix (nucleoside diphosphate linked moiety X)-type motif 5; Belongs to the Nudix hydrolase family.
    
 0.939
LOC102691370
Transient receptor potential cation channel, subfamily V, member 1; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.909
trpv4
Transient receptor potential cation channel, subfamily V, member 4; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.909
LOC102694648
Transient receptor potential cation channel, subfamily V, member 6; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.909
nudt14
Nudix (nucleoside diphosphate linked moiety X)-type motif 14.
    
 0.908
nudt2
Nudix (nucleoside diphosphate linked moiety X)-type motif 2.
    
 0.881
nudt3
Nudix (nucleoside diphosphate linked moiety X)-type motif 3b.
    
 0.881
nudt4
Nudix (nucleoside diphosphate linked moiety X)-type motif 4a.
    
 0.881
W5MMQ4_LEPOC
Nudix (nucleoside diphosphate linked moiety X)-type motif 8.
    
 0.879
prps2
Phosphoribosyl pyrophosphate synthetase 2.
     
 0.875
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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