STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MUI2_LEPOCXin actin binding repeat containing 1. (2219 aa)    
Predicted Functional Partners:
csrp3
Cysteine and glycine-rich protein 3 (cardiac LIM protein).
   
 
 0.813
W5M196_LEPOC
WD repeat domain 18.
   
 0.806
W5MDV3_LEPOC
Testis expressed 10.
   
 0.765
myl1
Myosin, light polypeptide 3, skeletal muscle.
   
 0.726
pes1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.675
CALM1
Calmodulin 1; Belongs to the calmodulin family.
    
 0.641
calm1
Uncharacterized protein; Belongs to the calmodulin family.
    
 0.641
CALM2
Calmodulin 2; Belongs to the calmodulin family.
    
 0.641
MYLPF
Myosin light chain, phosphorylatable, fast skeletal muscle.
   
 0.635
myo1c
Myosin Ic, paralog b; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
     
 0.632
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.