cpeb2 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cpeb2

Cytoplasmic polyadenylation element binding protein 2. (904 aa)

Predicted Functional Partners:

cpeb1

0.950

cpeb3

0.930

CPEB4

0.929

cdk1

0.877

aurka

0.872

W5N875_LEPOC

0.858

W5NBP5_LEPOC

0.854

aurkb

0.808

plk3

0.751

PLK1

0.751

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPEB4	PLK1	ENSLOCP00000011134	ENSLOCP00000006824	Cytoplasmic polyadenylation element binding protein 4a.	Serine/threonine-protein kinase PLK.	0.751
CPEB4	W5N875_LEPOC	ENSLOCP00000011134	ENSLOCP00000016834	Cytoplasmic polyadenylation element binding protein 4a.	Cyclin B2; Belongs to the cyclin family.	0.858
CPEB4	W5NBP5_LEPOC	ENSLOCP00000011134	ENSLOCP00000018054	Cytoplasmic polyadenylation element binding protein 4a.	Cyclin N-terminal domain containing 2; Belongs to the cyclin family.	0.857
CPEB4	aurka	ENSLOCP00000011134	ENSLOCP00000007654	Cytoplasmic polyadenylation element binding protein 4a.	Aurora kinase A; Belongs to the protein kinase superfamily.	0.872
CPEB4	aurkb	ENSLOCP00000011134	ENSLOCP00000016433	Cytoplasmic polyadenylation element binding protein 4a.	Aurora kinase B; Belongs to the protein kinase superfamily.	0.675
CPEB4	cdk1	ENSLOCP00000011134	ENSLOCP00000008084	Cytoplasmic polyadenylation element binding protein 4a.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.877
CPEB4	cpeb1	ENSLOCP00000011134	ENSLOCP00000018477	Cytoplasmic polyadenylation element binding protein 4a.	Cytoplasmic polyadenylation element binding protein 1b.	0.936
CPEB4	cpeb2	ENSLOCP00000011134	ENSLOCP00000012073	Cytoplasmic polyadenylation element binding protein 4a.	Cytoplasmic polyadenylation element binding protein 2.	0.929
CPEB4	cpeb3	ENSLOCP00000011134	ENSLOCP00000008635	Cytoplasmic polyadenylation element binding protein 4a.	Cytoplasmic polyadenylation element binding protein 3.	0.545
CPEB4	plk3	ENSLOCP00000011134	ENSLOCP00000002893	Cytoplasmic polyadenylation element binding protein 4a.	Serine/threonine-protein kinase PLK.	0.751
PLK1	CPEB4	ENSLOCP00000006824	ENSLOCP00000011134	Serine/threonine-protein kinase PLK.	Cytoplasmic polyadenylation element binding protein 4a.	0.751
PLK1	W5N875_LEPOC	ENSLOCP00000006824	ENSLOCP00000016834	Serine/threonine-protein kinase PLK.	Cyclin B2; Belongs to the cyclin family.	0.926
PLK1	W5NBP5_LEPOC	ENSLOCP00000006824	ENSLOCP00000018054	Serine/threonine-protein kinase PLK.	Cyclin N-terminal domain containing 2; Belongs to the cyclin family.	0.925
PLK1	aurka	ENSLOCP00000006824	ENSLOCP00000007654	Serine/threonine-protein kinase PLK.	Aurora kinase A; Belongs to the protein kinase superfamily.	0.908
PLK1	aurkb	ENSLOCP00000006824	ENSLOCP00000016433	Serine/threonine-protein kinase PLK.	Aurora kinase B; Belongs to the protein kinase superfamily.	0.904
PLK1	cdk1	ENSLOCP00000006824	ENSLOCP00000008084	Serine/threonine-protein kinase PLK.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.899
PLK1	cpeb1	ENSLOCP00000006824	ENSLOCP00000018477	Serine/threonine-protein kinase PLK.	Cytoplasmic polyadenylation element binding protein 1b.	0.782
PLK1	cpeb2	ENSLOCP00000006824	ENSLOCP00000012073	Serine/threonine-protein kinase PLK.	Cytoplasmic polyadenylation element binding protein 2.	0.751
PLK1	cpeb3	ENSLOCP00000006824	ENSLOCP00000008635	Serine/threonine-protein kinase PLK.	Cytoplasmic polyadenylation element binding protein 3.	0.751
W5N875_LEPOC	CPEB4	ENSLOCP00000016834	ENSLOCP00000011134	Cyclin B2; Belongs to the cyclin family.	Cytoplasmic polyadenylation element binding protein 4a.	0.858