STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102693234Fras1 related extracellular matrix 1b. (2035 aa)    
Predicted Functional Partners:
W5MKP6_LEPOC
Fraser extracellular matrix complex subunit 1.
   
0.928
frem1
Fras1 related extracellular matrix 1a.
  
0.890
frem2
FRAS1 related extracellular matrix 2b.
  
0.888
npnt
Nephronectin a.
    
 0.874
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
  0.867
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.853
LOC102688010
Integrin beta; Belongs to the integrin beta chain family.
    
  0.852
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
  0.852
itgbl1
Integrin, beta-like 1.
    
  0.852
itgb7
Integrin beta; Belongs to the integrin beta chain family.
    
  0.852
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.