STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102694086Contactin 3b. (1032 aa)    
Predicted Functional Partners:
ptprg
Protein tyrosine phosphatase receptor type Ga.
    
 
 0.805
W5MXT3_LEPOC
Amyloid beta (A4) precursor protein b.
   
 
 0.798
W5LZ11_LEPOC
Neuronal cell adhesion molecule a.
    
0.767
chl1
Cell adhesion molecule L1-like b.
    
0.767
W5N2A4_LEPOC
Neurofascin homolog (chicken) a.
    
0.767
W5NCC6_LEPOC
L1 cell adhesion molecule, paralog a.
    
0.767
aplp2
Amyloid beta (A4) precursor-like protein 2.
   
 
 0.661
W5M8N9_LEPOC
Amyloid beta (A4) precursor-like protein 1.
   
 
 0.636
gypc
Glycophorin C (Gerbich blood group).
   
 0.613
LOC102688699
Contactin associated protein like 3.
   
 0.613
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.