STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
klf4Kruppel-like factor 4. (414 aa)    
Predicted Functional Partners:
ak9
Adenylate kinase 9.
    
  0.871
rps27a
Ribosomal protein S27a.
    
  0.536
relb
V-rel avian reticuloendotheliosis viral oncogene homolog B.
    
  0.534
W5NGW5_LEPOC
V-rel avian reticuloendotheliosis viral oncogene homolog.
    
  0.534
nfkb1
Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1.
    
  0.532
W5N3T5_LEPOC
Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).
    
  0.532
LOC102693253
POU domain protein.
    
 0.526
bard1
BRCA1 associated RING domain 1.
    
  0.513
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.503
sox2
SRY-box transcription factor 2.
    
 0.489
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.