STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102686545Zgc:136908; Belongs to the AAA ATPase family. (807 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 0.999
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.991
UBXN4
UBX domain protein 4.
    
 0.988
ubxn6
UBX domain protein 6.
    
 0.988
W5NIR9_LEPOC
UBX domain protein 2A.
   
 0.986
nsfl1c
NSFL1 (p97) cofactor (p47).
   
 0.985
derl1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
   
 0.978
W5MZK7_LEPOC
Valosin containing protein lysine (K) methyltransferase.
   
 0.972
faf2
Fas associated factor family member 2.
   
 0.972
faf1
Fas (TNFRSF6) associated factor 1.
   
 0.971
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.