STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rybpRING1 and YY1 binding protein. (257 aa)    
Predicted Functional Partners:
rnf2
Ring finger protein 2.
    
 0.975
LOC102698732
Si:ch211-195d17.2.
   
 0.896
pcgf1
Polycomb group ring finger 1.
    
 0.880
pcgf5
Polycomb group ring finger 5b.
    
 0.879
PCGF3
Polycomb group ring finger 3.
    
 0.871
bmi1
Bmi1 polycomb ring finger oncogene 1b.
    
 0.857
W5N8B6_LEPOC
RING-type domain-containing protein.
    
 0.857
pcgf6
Polycomb group ring finger 6.
    
 0.856
LOC107077285
Uncharacterized protein.
    
 
 0.852
W5MCP8_LEPOC
Lysine (K)-specific demethylase 2Ba.
    
 
 0.852
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.