STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmf1TATA element modulatory factor 1. (1140 aa)    
Predicted Functional Partners:
rab6a
RAB6A, member RAS oncogene family.
    
 0.763
rab41
RAB41, member RAS oncogene family.
    
 0.763
gcc1
GRIP and coiled-coil domain containing 1.
     
 0.762
W5MWF9_LEPOC
GRIP domain-containing protein.
   
 0.736
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
     
 0.732
rab36
RAB36, member RAS oncogene family.
    
 0.727
rab34
RAB34, member RAS oncogene family a.
    
 0.727
cog3
Component of oligomeric golgi complex 3.
   
 
 0.723
vps54
VPS54 subunit of GARP complex.
   
 
 0.722
W5M2N5_LEPOC
VPS51 subunit of GARP complex.
     
 0.713
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.