STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MVS3_LEPOCUncharacterized protein. (271 aa)    
Predicted Functional Partners:
LOC102693234
Fras1 related extracellular matrix 1b.
   
 
  0.691
frem1
Fras1 related extracellular matrix 1a.
   
 
  0.691
W5LZU4_LEPOC
Tenascin C.
    
 0.685
tnr
Tenascin R (restrictin, janusin).
    
 0.685
TNN
Tenascin N.
    
 0.685
W5MKP6_LEPOC
Fraser extracellular matrix complex subunit 1.
   
 
  0.640
EGFLAM
EGF like, fibronectin type III and laminin G domains.
    
 0.568
ptk7
Protein tyrosine kinase 7a; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.494
W5M845_LEPOC
Uncharacterized protein.
   
 0.488
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.479
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.