STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102684332Uncharacterized protein. (756 aa)    
Predicted Functional Partners:
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.913
W5M4H6_LEPOC
DNA methyltransferase 1 associated protein 1.
   
 0.911
W5MM99_LEPOC
Vacuolar protein sorting 72 homolog a.
    
 0.909
ruvbl2
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
   
 0.907
znhit1
Zinc finger, HIT-type containing 1.
    
 
 0.865
W5MQE4_LEPOC
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
   
 0.838
H2AZ1
Histone H2A; Belongs to the histone H2A family.
    
 0.830
W5NDT6_LEPOC
Histone H2A; Belongs to the histone H2A family.
    
 0.830
W5MSQ6_LEPOC
AT rich interactive domain 4A (RBP1-like).
    
 0.824
W5NG20_LEPOC
Translocase of outer mitochondrial membrane 20.
    
 0.824
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.