STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lims1LIM domain-containing protein. (387 aa)    
Predicted Functional Partners:
rsu1
Ras suppressor protein 1.
   
 0.999
W5MTJ8_LEPOC
Integrin-linked kinase.
   
 0.992
parva
Parvin, alpha b.
   
 0.959
W5NE51_LEPOC
Parvin, beta.
   
 0.959
W5NE52_LEPOC
Parvin, gamma.
   
 0.922
W5N1M5_LEPOC
DH domain-containing protein.
   
 0.897
tmem203
Transmembrane protein 203.
   
 0.848
pop7
Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences.
   
 0.848
nck1
Cytoplasmic protein.
    
 
 0.712
nck2
Cytoplasmic protein.
    
 
 0.712
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.