STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102690146Cystatin domain-containing protein. (137 aa)    
Predicted Functional Partners:
LOC102696688
Uncharacterized protein.
   
 0.577
LOC102688110
Uncharacterized protein.
   
 0.577
W5N6W8_LEPOC
Uncharacterized protein.
   
 0.577
rps14
Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
   
 0.551
cd74
CD74 molecule, major histocompatibility complex, class II invariant chain a.
   
 0.551
apaf1
Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.
   
 0.520
W5M1F3_LEPOC
Cathepsin F; Belongs to the peptidase C1 family.
   
0.502
ctso
Cathepsin O; Belongs to the peptidase C1 family.
   
 0.502
csta
Cystatin domain-containing protein; Belongs to the cystatin family.
   
 0.494
CSTB
Cystatin B; Belongs to the cystatin family.
   
 0.494
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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