STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MWS1_LEPOCZgc:162324. (616 aa)    
Predicted Functional Partners:
pacrg
PARK2 co-regulated.
    
 
 0.819
efhb
EF-hand domain family, member B.
    
   0.778
W5ND57_LEPOC
Enkurin, TRPC channel interacting protein.
    
 
 0.736
efhc1
EF-hand domain (C-terminal) containing 1.
    
 
 0.687
W5M1L2_LEPOC
EF-hand domain (C-terminal) containing 2.
    
 
 0.687
clg25h1orf158
Si:ch211-226m7.4.
    
   0.622
C9orf135
Chromosome 9 open reading frame 135.
    
   0.622
W5MVW2_LEPOC
Si:ch211-163l21.7.
    
   0.622
spag8
Sperm associated antigen 8.
    
   0.622
LOC102686996
Cilia and flagella associated protein 126.
    
   0.622
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.