STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kctd16Potassium channel tetramerization domain containing 16b. (427 aa)    
Predicted Functional Partners:
cul3
Cullin 3a; Belongs to the cullin family.
    
 0.593
GABBR2
Gamma-aminobutyric acid (GABA) B receptor, 2.
    
 
 0.554
ube2f
Ubiquitin-conjugating enzyme E2F (putative); Belongs to the ubiquitin-conjugating enzyme family.
    
  0.521
cul1
Cullin 1a; Belongs to the cullin family.
    
 0.497
tfap2d
Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).
   
 0.497
tfap2e
Transcription factor AP-2 epsilon.
   
 0.483
kiaa1958
Si:ch211-126i22.5.
    
 0.483
W5MJ62_LEPOC
Transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma).
   
 0.483
ccdc106
Uncharacterized protein.
    
 0.483
tfap2a
Transcription factor AP-2 alpha.
   
 0.483
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.