STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab33bRAB33B, member RAS oncogene family a. (231 aa)    
Predicted Functional Partners:
atg16l2
WD_REPEATS_REGION domain-containing protein.
    
 0.978
atg16l1
ATG16 autophagy related 16-like 1 (S. cerevisiae).
    
 0.978
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.875
W5N8C6_LEPOC
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.861
LOC102697452
Zgc:101559.
  
  
 
0.859
TRAPPC2B
Trafficking protein particle complex 2B.
    
 0.855
trappc4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.854
trappc5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.847
trappc8
Trafficking protein particle complex 8.
    
 0.845
W5NAK0_LEPOC
TBC1 domain family, member 25.
     
 0.805
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.