STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trim23Tripartite motif containing 23. (581 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
   
 0.991
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.944
W5MVF4_LEPOC
Uncharacterized protein.
   
 0.944
itsn2
Intersectin 2b.
    
 0.943
W5MTQ7_LEPOC
NME/NM23 family member 8; Belongs to the NDK family.
   
 0.930
W5N0B4_LEPOC
Uncharacterized protein; Belongs to the NDK family.
   
 0.930
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.901
arf6
ADP-ribosylation factor 6b; Belongs to the small GTPase superfamily. Arf family.
   
 
0.885
W5MJ94_LEPOC
ADP-ribosylation factor-like 15b.
   
 
0.882
W5NJB2_LEPOC
Uncharacterized protein.
   
 0.816
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.