STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppwd1Peptidylprolyl isomerase domain and WD repeat containing 1. (626 aa)    
Predicted Functional Partners:
cwc22
CWC22 spliceosome associated protein homolog.
   
  0.994
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
0.994
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
  0.993
ddx39a
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa.
    
  0.981
W5N908_LEPOC
Aly/REF export factor.
    
  0.978
W5N880_LEPOC
Serrate RNA effector molecule homolog (Arabidopsis).
   
 
  0.976
W5M5R0_LEPOC
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
0.974
mtrex
Mtr4 exosome RNA helicase.
   
 0.957
W5M1R2_LEPOC
Peptidylprolyl isomerase (cyclophilin)-like 2.
  
0.943
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.939
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.