STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ylpm1YLP motif containing 1. (2112 aa)    
Predicted Functional Partners:
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
   
 
  0.681
LOC102685971
Uncharacterized protein.
   
 
  0.681
W5M3M3_LEPOC
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.617
PPP1CC
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.617
W5MXN1_LEPOC
FCF1 rRNA-processing protein.
 
   
 0.606
W5LW76_LEPOC
Serine/threonine-protein phosphatase.
    
   0.582
znf318
C2H2-type domain-containing protein.
   
  
 0.522
W5LZL7_LEPOC
GTPase activating protein and VPS9 domains 1.
   
 
  0.443
wwox
WW domain containing oxidoreductase.
    
  0.428
W5NM28_LEPOC
Uncharacterized protein.
    
  0.423
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.