STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MXR9_LEPOCGA binding protein transcription factor subunit alpha. (446 aa)    
Predicted Functional Partners:
W5MLW5_LEPOC
GA binding protein transcription factor subunit beta 2b.
    
 0.974
gabpb1
GA binding protein transcription factor subunit beta 1.
    
 0.974
jam3
Junctional adhesion molecule 3a.
 
   
  0.696
srf
Serum response factor b.
    
 0.648
W5MHD6_LEPOC
Transcription factor A, mitochondrial.
   
 
 0.638
atp5pf
ATP synthase-coupling factor 6, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain; Belongs to the eukaryotic ATPase subunit F6 family.
      
 0.592
ppargc1a
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
    
 0.546
runx3
Runt-related transcription factor.
   
 0.538
runx1
Runt-related transcription factor.
   
 0.538
runx2
RUNX family transcription factor 2a.
   
 0.538
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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