STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yod1YOD1 deubiquitinase. (341 aa)    
Predicted Functional Partners:
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 
 0.979
plaa
Phospholipase A2-activating protein.
    
 
 0.977
nsfl1c
NSFL1 (p97) cofactor (p47).
   
 
 0.972
ube4b
Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae).
    
 
 0.956
ube4a
Ubiquitination factor E4A (UFD2 homolog, yeast).
    
 
 0.947
rps27a
Ribosomal protein S27a.
   
 
 0.947
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.946
LOC102686545
Zgc:136908; Belongs to the AAA ATPase family.
   
 0.946
faap100
Si:dkey-57h18.1.
    
 
 0.945
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.945
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.