STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sap18Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins. (153 aa)    
Predicted Functional Partners:
rnps1
RNA binding protein S1, serine-rich domain.
   
 0.999
pnn
Pinin, desmosome associated protein.
    
 0.996
W5MSQ6_LEPOC
AT rich interactive domain 4A (RBP1-like).
   
 
 0.986
W5NG20_LEPOC
Translocase of outer mitochondrial membrane 20.
   
 
 0.986
suds3
SDS3 homolog, SIN3A corepressor complex component.
     
 0.947
pabpn1
Poly(A) binding protein, nuclear 1.
   
 0.936
pabpn1l
Poly(A) binding protein, nuclear 1-like (cytoplasmic).
   
 0.936
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.925
W5N908_LEPOC
Aly/REF export factor.
   
 
 0.915
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.914
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.