STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcc3ATP-binding cassette, sub-family C (CFTR/MRP), member 3. (1535 aa)    
Predicted Functional Partners:
W5NNT2_LEPOC
Sulfite oxidase; Belongs to the cytochrome b5 family.
   
 
  0.866
KATNAL2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
  
 0.651
ak9
Adenylate kinase 9.
  
 
  0.613
gopc
Golgi-associated PDZ and coiled-coil motif containing.
   
 0.605
usp10
Ubiquitin carboxyl-terminal hydrolase.
    
  0.589
W5MTQ7_LEPOC
NME/NM23 family member 8; Belongs to the NDK family.
  
 0.586
W5N0B4_LEPOC
Uncharacterized protein; Belongs to the NDK family.
  
 0.586
hsdl2
Hydroxysteroid dehydrogenase like 2.
   
 0.574
rnf185
Ring finger protein 185.
    
 0.569
derl1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
  0.564
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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