STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vhlVon Hippel-Lindau tumor suppressor. (171 aa)    
Predicted Functional Partners:
eloc
Elongin C paralog a; Belongs to the SKP1 family.
   
 0.988
cul2
Cullin 2; Belongs to the cullin family.
    
 0.986
ubxn7
UBX domain protein 7.
   
  0.984
rnf7
Ring finger protein 7.
    
 0.892
W5MN47_LEPOC
Si:ch211-202c21.7.
    
 0.892
cops5
COP9 signalosome subunit 5.
    
  0.886
W5M0H1_LEPOC
PAS domain-containing protein.
    
 0.868
HIF1A
Hypoxia inducible factor 1 subunit alpha.
    
 0.868
W5NAL6_LEPOC
Hypoxia inducible factor 1 subunit alpha, like.
    
 0.868
epas1
Endothelial PAS domain protein 1b.
    
 0.868
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.