STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srpk1SRSF protein kinase 1b. (658 aa)    
Predicted Functional Partners:
srsf6
Uncharacterized protein.
    
 0.957
W5M9G1_LEPOC
Uncharacterized protein.
    
 0.957
srsf5
Serine and arginine rich splicing factor 5b.
    
 0.957
LOC102694417
Serine and arginine rich splicing factor 5a.
    
 0.957
srsf1
Serine and arginine rich splicing factor 1b.
    
 0.943
srsf9
Serine and arginine rich splicing factor 9.
    
 0.933
srsf2
Serine and arginine rich splicing factor 2a.
    
 0.924
srsf3
Serine and arginine rich splicing factor 3a.
    
 0.914
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
   0.888
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.851
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.