STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chmp5Charged multivesicular body protein 5a. (222 aa)    
Predicted Functional Partners:
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.999
chmp1a
Charged multivesicular body protein 1A.
   
 0.988
chmp3
Charged multivesicular body protein 3.
   
 0.988
chmp1b
Chromatin modifying protein 1B.
   
 0.988
chmp4b
Charged multivesicular body protein 4Ba.
  
0.987
chmp4c
Charged multivesicular body protein 4C.
   
 0.986
W5LYE8_LEPOC
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
   
 0.985
ist1
IST1 factor associated with ESCRT-III.
    
 
 0.967
vps4a
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
   
 0.960
vps4b
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
   
 0.960
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.