STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102699074Copine Va. (574 aa)    
Predicted Functional Partners:
rnaseh2b
Ribonuclease H2, subunit B.
   
 
 0.689
rnaseh2a
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
 
 0.653
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.542
pi4ka
Phosphatidylinositol 4-kinase, catalytic, alpha b; Belongs to the PI3/PI4-kinase family.
     
 0.515
W5MPG8_LEPOC
Phosphatidylinositol 4-kinase, catalytic, beta; Belongs to the PI3/PI4-kinase family.
     
 0.515
W5MLC2_LEPOC
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
     
 0.458
W5M3Z5_LEPOC
Vesicle-associated membrane protein 3 (cellubrevin).
   
 
 0.457
pcsk9
Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family.
     
 0.449
sacm1l
SAC1 like phosphatidylinositide phosphatase a.
     
 0.448
FIG4
FIG4 phosphoinositide 5-phosphatase.
     
 0.445
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (26%) [HD]