STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
itgb8Integrin beta; Belongs to the integrin beta chain family. (807 aa)    
Predicted Functional Partners:
W5N9Y4_LEPOC
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.971
W5MHL6_LEPOC
Integrin alpha 4; Belongs to the integrin alpha chain family.
    
 0.959
vtn
Vitronectin a.
    
 0.952
tln1
Talin 1.
    
 0.950
itga3
Integrin, alpha 3a; Belongs to the integrin alpha chain family.
    
 0.947
W5LVA1_LEPOC
Integrin_alpha2 domain-containing protein.
    
 0.928
W5MBT4_LEPOC
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
    
 0.928
itgav
Integrin, alpha V; Belongs to the integrin alpha chain family.
    
 0.928
tln2
Talin 2a.
    
 0.926
ITGA7
Integrin subunit alpha 7; Belongs to the integrin alpha chain family.
    
 0.913
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.