STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102682629Cryptochrome circadian regulator 4. (586 aa)    
Predicted Functional Partners:
per1
Period circadian clock 1a.
   
 0.855
W5N9K3_LEPOC
Clock circadian regulator a.
    
 0.846
W5NDN1_LEPOC
Aryl hydrocarbon receptor nuclear translocator-like 2.
   
 0.845
arntl
Aryl hydrocarbon receptor nuclear translocator-like 1a.
   
 0.844
timeless
Timeless circadian clock.
    
 0.843
pasd1
Neuronal PAS domain protein 2.
    
 0.831
csnk1d
Casein kinase 1, delta b; Belongs to the protein kinase superfamily.
    
 0.810
W5M3Y2_LEPOC
Period circadian clock 3.
   
 0.808
W5MAA9_LEPOC
Period circadian clock 2.
   
 0.808
W5N171_LEPOC
Casein kinase 1, epsilon; Belongs to the protein kinase superfamily.
    
 0.792
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.