STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adamts3ADAM metallopeptidase with thrombospondin type 1 motif, 3. (1089 aa)    
Predicted Functional Partners:
EPHA5
EPH receptor A5.
      
 0.613
W5LWF4_LEPOC
Beta 3-glucosyltransferase a.
    
 0.494
svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
   
 0.442
pofut2
Protein O-fucosyltransferase 2.
     
 0.426
adamts8
ADAM metallopeptidase with thrombospondin type 1 motif, 15b.
   
 
0.410
W5M5Y4_LEPOC
Collagen, type XXVII, alpha 1b.
    
 0.403
W5MDK5_LEPOC
Fibrillar collagen NC1 domain-containing protein.
    
 0.403
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.