STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam126aFamily with sequence similarity 126 member A. (576 aa)    
Predicted Functional Partners:
pi4ka
Phosphatidylinositol 4-kinase, catalytic, alpha b; Belongs to the PI3/PI4-kinase family.
    
 
 0.951
ttc7b
Tetratricopeptide repeat domain 7B.
    
 
 0.876
ttc7a
Tetratricopeptide repeat domain 7A.
    
 
 0.845
efr3a
EFR3 homolog A (S. cerevisiae).
      
 0.549
aimp1
Aminoacyl tRNA synthetase complex interacting multifunctional protein 1a.
      
 0.536
tmem150a
Transmembrane protein 150Aa.
      
 0.520
zcchc24
Zinc finger, CCHC domain containing 24.
      
 0.517
efr3b
EFR3 homolog Ba (S. cerevisiae).
      
 0.489
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.